Personal profile
Biography
The main goal of my research career has been to uncover new principles of gene regulation fundamental for health and developmental patterning. To do so, I have used different model organisms and a wide variety of approaches to uncover new gene regulatory mechanisms.
My Ph.D. studies integrated a functional and evolutionary approach to answer a fundamental question in developmental biology: how to establish an asymmetrical pattern of gene activity to generate asymmetrical shapes during flower development. For my postdoctoral studies I changed my research model organism from plants to fruit flies working in the lab of Michael Levine at Princeton University. My work was focused on understanding how long-range regulatory interactions are established between enhancers and promoters to control gene expression in the nuclear 3D space.
In 2023, I moved back to Portugal to start my own research group (3D Gene Regulation & Development lab) at Católica Biomedical Research Centre (CBR) with an Assistant Professor position at the Católica Medical School.
My lab now investigates how the 3D organization of the genome regulates gene expression and coordinates developmental patterning. We combine quantitative live-imaging tools with functional genomic methods to understand how specific enhancers and promoters find each other within the nucleus and how the folding of the genome orchestrates precise spatiotemporal patterns of gene activity during development.
Keywords
- QH301 Biology
- Gene regulation
- Development
- 3D Genome Structure
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 12 Responsible Consumption and Production
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Collaborations and top research areas from the last five years
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Transcriptional coupling of distant regulatory genes in living embryos
Levo, M., Raimundo, J., Bing, X. Y., Sisco, Z., Batut, P. J., Ryabichko, S., Gregor, T. & Levine, M. S., 26 May 2022, In: Nature. 605, 7911, p. 754-760 7 p.Research output: Contribution to journal › Article › peer-review
110 Citations (Scopus) -
How do genomes encode developmental time?
Raimundo, J. & Levine, M., 1 Jan 2023, In: Genes & development. 37, 1-2, p. 37-40 5 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)19 Downloads -
Genome organization controls transcriptional dynamics during development
Batut, P. J., Bing, X. Y., Sisco, Z., Raimundo, J., Levo, M. & Levine, M. S., 4 Feb 2022, In: Science. 375, 6580, p. 1-4 4 p., A36.Research output: Contribution to journal › Article › peer-review
147 Citations (Scopus) -
SnapShot: the regulatory genome
Bing, X. Y., Batut, P. J., Levo, M., Levine, M. & Raimundo, J., 17 Sept 2020, In: Cell. 182, 6, p. 1674-1674.e1 2 p.Research output: Contribution to journal › Comment/debate
Open Access4 Citations (Scopus) -
Successive domain rearrangements underlie the evolution of a regulatory module controlled by a small interfering peptide
Raimundo, J., Sobral, R., Laranjeira, S. & Costa, M. M. R., 2018, In: Molecular Biology and Evolution. 35, 12, p. 2873-2885 13 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus)