TY - JOUR
T1 - Grapevine and wine metabolomics-based guidelines for fair data and metadata management
AU - Savoi, Stefania
AU - Arapitsas, Panagiotis
AU - Duchêne, Éric
AU - Nikolantonaki, Maria
AU - Ontañón, Ignacio
AU - Carlin, Silvia
AU - Schwander, Florian
AU - Gougeon, Régis D.
AU - Ferreira, António César Silva
AU - Theodoridis, Georgios
AU - Töpfer, Reinhard
AU - Vrhovsek, Urska
AU - Adam-Blondon, Anne Francoise
AU - Pezzotti, Mario
AU - Mattivi, Fulvio
N1 - Funding Information:
Funding: This article/publication is based upon work from COST Action CA 17111 INTEGRAPE, supported by COST (European Cooperation in Science and Technology).
Publisher Copyright:
© 2021 by the authors. Licensee MDPI, Basel, Switzerland.
PY - 2021/11
Y1 - 2021/11
N2 - In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and metadata regarding (i) meaningful information on experimental design and phenotyping, (ii) sample collection, (iii) sample preparation, (iv) chemotype analysis, (v) data analysis (vi) metabolite annotation, and (vii) basic ontologies. We hope that these guidelines will be helpful for the grapevine and wine metabolomics community and that it will benefit from the true potential of data usage in creating new knowledge being revealed.
AB - In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and metadata regarding (i) meaningful information on experimental design and phenotyping, (ii) sample collection, (iii) sample preparation, (iv) chemotype analysis, (v) data analysis (vi) metabolite annotation, and (vii) basic ontologies. We hope that these guidelines will be helpful for the grapevine and wine metabolomics community and that it will benefit from the true potential of data usage in creating new knowledge being revealed.
KW - Chromatography
KW - Mass spectrometry
KW - Metabolites
KW - Omics
KW - Open-data
KW - Plants
KW - Vitis
KW - Wine
UR - http://www.scopus.com/inward/record.url?scp=85118938701&partnerID=8YFLogxK
U2 - 10.3390/metabo11110757
DO - 10.3390/metabo11110757
M3 - Article
C2 - 34822415
AN - SCOPUS:85118938701
SN - 2218-1989
VL - 11
JO - Metabolites
JF - Metabolites
IS - 11
M1 - 757
ER -