Development of a workflow for protein sequence analysis based on the taverna workbench® software

Mariana B. Monteiro; Manuela E. Pintado; Francisco X. Malcata; Conrad Bessant; Patrícia R. Moreira

doi:10.1007/978-3-642-02481-8_169

Development of a workflow for protein sequence analysis based on the taverna workbench® software

Mariana B. Monteiro, Manuela E. Pintado, Francisco X. Malcata, Conrad Bessant, Patrícia R. Moreira

Resultado de pesquisa › revisão de pares

Resumo

A workflow based on the Taverna Workbench® software and tentatively named WPSA was developed to perform a generic protein sequence analysis eliminating the need to cut and paste data throughout web applications. The program performs a homology search, a multiple sequence alignment and a phylogeny analysis using PHYLogeny Interface Package (PHYLIP). The workflow designed gives a fast and significant answer to the user about the input sequence entered taking between 5 to 10 minutes to run depending on the Internet connection and web services.

Idioma original	English
Título da publicação do anfitrião	Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, Ambient Assisted Living
Subtítulo da publicação do anfitrião	10th International Work-Conference Artificial Neural Networks, IWANN 2009 Workshops
Páginas	1118-1124
Número de páginas	7
Volume	5518
Edição	PART 2
DOIs	https://doi.org/10.1007/978-3-642-02481-8_169 https://doi.org/10.1007/978-3-642-02481-8_169
Estado da publicação	Publicado - jun. 2009
Evento	10th International Work-Conference on Artificial Neural Networks - Salamanca Duração: 10 jun. 2009 → 12 jun. 2009

Série de publicação

Nome	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Número	PART 2
Volume	5518 LNCS
ISSN (impresso)	0302-9743
ISSN (eletrónico)	1611-3349

Conferência

Conferência	10th International Work-Conference on Artificial Neural Networks
Título abreviado	IWANN 2009
País/Território	Spain
Cidade	Salamanca
Período	10/06/09 → 12/06/09

Acesso ao documento

http://hdl.handle.net/10400.14/5443

Outros arquivos e links

http://www.scopus.com/inward/record.url?scp=77952557525&partnerID=8YFLogxK

Citação

Monteiro, M. B., Pintado, M. E., Malcata, F. X., Bessant, C., & Moreira, P. R. (2009). Development of a workflow for protein sequence analysis based on the taverna workbench® software. Em Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, Ambient Assisted Living: 10th International Work-Conference Artificial Neural Networks, IWANN 2009 Workshops (PART 2 ed., Vol. 5518, pp. 1118-1124). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5518 LNCS, N.º PART 2). https://doi.org/10.1007/978-3-642-02481-8_169, https://doi.org/10.1007/978-3-642-02481-8_169

Monteiro, Mariana B. ; Pintado, Manuela E. ; Malcata, Francisco X. et al. / Development of a workflow for protein sequence analysis based on the taverna workbench® software. Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, Ambient Assisted Living: 10th International Work-Conference Artificial Neural Networks, IWANN 2009 Workshops. Vol. 5518 PART 2. ed. 2009. pp. 1118-1124 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); PART 2).

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title = "Development of a workflow for protein sequence analysis based on the taverna workbench{\textregistered} software",

abstract = "A workflow based on the Taverna Workbench{\textregistered} software and tentatively named WPSA was developed to perform a generic protein sequence analysis eliminating the need to cut and paste data throughout web applications. The program performs a homology search, a multiple sequence alignment and a phylogeny analysis using PHYLogeny Interface Package (PHYLIP). The workflow designed gives a fast and significant answer to the user about the input sequence entered taking between 5 to 10 minutes to run depending on the Internet connection and web services.",

keywords = "Protein sequence analysis, Taverna workbench{\textregistered}, Web services, Workflow",

author = "Monteiro, {Mariana B.} and Pintado, {Manuela E.} and Malcata, {Francisco X.} and Conrad Bessant and Moreira, {Patr{\'i}cia R.}",

year = "2009",

month = jun,

doi = "10.1007/978-3-642-02481-8_169",

language = "English",

isbn = "3642024807",

volume = "5518",

series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

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Monteiro, MB, Pintado, ME, Malcata, FX, Bessant, C & Moreira, PR 2009, Development of a workflow for protein sequence analysis based on the taverna workbench® software. em Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, Ambient Assisted Living: 10th International Work-Conference Artificial Neural Networks, IWANN 2009 Workshops. PART 2 edn, vol. 5518, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), n.º PART 2, vol. 5518 LNCS, pp. 1118-1124, 10th International Work-Conference on Artificial Neural Networks, Salamanca, Spain, 10/06/09. https://doi.org/10.1007/978-3-642-02481-8_169, https://doi.org/10.1007/978-3-642-02481-8_169

Development of a workflow for protein sequence analysis based on the taverna workbench® software. / Monteiro, Mariana B.; Pintado, Manuela E.; Malcata, Francisco X. et al.
Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, Ambient Assisted Living: 10th International Work-Conference Artificial Neural Networks, IWANN 2009 Workshops. Vol. 5518 PART 2. ed. 2009. p. 1118-1124 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5518 LNCS, N.º PART 2).

Resultado de pesquisa › revisão de pares

TY - GEN

T1 - Development of a workflow for protein sequence analysis based on the taverna workbench® software

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AU - Pintado, Manuela E.

AU - Malcata, Francisco X.

AU - Bessant, Conrad

AU - Moreira, Patrícia R.

PY - 2009/6

Y1 - 2009/6

N2 - A workflow based on the Taverna Workbench® software and tentatively named WPSA was developed to perform a generic protein sequence analysis eliminating the need to cut and paste data throughout web applications. The program performs a homology search, a multiple sequence alignment and a phylogeny analysis using PHYLogeny Interface Package (PHYLIP). The workflow designed gives a fast and significant answer to the user about the input sequence entered taking between 5 to 10 minutes to run depending on the Internet connection and web services.

AB - A workflow based on the Taverna Workbench® software and tentatively named WPSA was developed to perform a generic protein sequence analysis eliminating the need to cut and paste data throughout web applications. The program performs a homology search, a multiple sequence alignment and a phylogeny analysis using PHYLogeny Interface Package (PHYLIP). The workflow designed gives a fast and significant answer to the user about the input sequence entered taking between 5 to 10 minutes to run depending on the Internet connection and web services.

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KW - Web services

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T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

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Monteiro MB, Pintado ME, Malcata FX, Bessant C, Moreira PR. Development of a workflow for protein sequence analysis based on the taverna workbench® software. Em Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, Ambient Assisted Living: 10th International Work-Conference Artificial Neural Networks, IWANN 2009 Workshops. PART 2 ed. Vol. 5518. 2009. p. 1118-1124. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); PART 2). doi: 10.1007/978-3-642-02481-8_169, 10.1007/978-3-642-02481-8_169

Development of a workflow for protein sequence analysis based on the taverna workbench® software

Resumo

Série de publicação

Conferência

Acesso ao documento

Outros arquivos e links

Impressão digital

Citação