Development of a workflow for protein sequence analysis based on the taverna workbench® software

Mariana B. Monteiro, Manuela E. Pintado, Francisco X. Malcata, Conrad Bessant, Patrícia R. Moreira

Resultado de pesquisarevisão de pares

Resumo

A workflow based on the Taverna Workbench® software and tentatively named WPSA was developed to perform a generic protein sequence analysis eliminating the need to cut and paste data throughout web applications. The program performs a homology search, a multiple sequence alignment and a phylogeny analysis using PHYLogeny Interface Package (PHYLIP). The workflow designed gives a fast and significant answer to the user about the input sequence entered taking between 5 to 10 minutes to run depending on the Internet connection and web services.

Idioma originalEnglish
Título da publicação do anfitriãoDistributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, Ambient Assisted Living - 10th Int. Work-Conf. Artificial Neural Networks, IWANN 2009 Workshops, Proceedings
Páginas1118-1124
Número de páginas7
Volume5518
EdiçãoPART 2
DOIs
Estado da publicaçãoPublicado - 2009
Evento10th International Work-Conference on Artificial Neural Networks, IWANN 2009 - Salamanca
Duração: 10 jun 200912 jun 2009

Série de publicação

NomeLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
NúmeroPART 2
Volume5518 LNCS
ISSN (impresso)0302-9743
ISSN (eletrónico)1611-3349

Conferência

Conferência10th International Work-Conference on Artificial Neural Networks, IWANN 2009
País/TerritórioSpain
CidadeSalamanca
Período10/06/0912/06/09

Impressão digital

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